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Book review: “Missing Microbes” by Martin J. Blaser

by Peter A. Belmont / 2014-09-06
© 2014 Peter Belmont


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What do asthma, food and other allergies, obesity, GERD, early-onset diabetes, certain breast-cancers, and autism (to name a few diseases) have in common? They have become “modern plagues”—that is, widespread diseases in the developed world—since the widespread use of antibiotics, especially among young children,and birth by C-section became common there.

Martin J. Blaser, MD, writes a fascinating story, “Missing Microbes”, presenting and defending the idea that humans and their symbiotic microbes have lived together for thousands of years and that we do ourselves no favor by recklessly using antibiotics which, as side effects, wipe out many of our ancient friends (or, if not always friends, then symbionts).

Nor do we do ourselves any favor by cavalierly wiping them out without also doing research to learn how these ancient co-habitors help (and perhaps also harm) us.

The easy idea, held even by many in the medical profession, is that a microbe is either “good” or “bad” (if “bad”, calling it a pathogen). The better idea, presented in this book, is that the human body with its resident microbes is an ecological system, developed over millennia, and that the microbes which have lived with humans since the dawn of homo sapiens (and earlier!) should not be wantonly destroyed.

Blaser suggests that there are a number of modern “plagues” which have sprung up as widespread diseases only recently and only in medically-advanced countries since the beginning of widespread use of antibiotics and widespread use of C-sections in place of normal birthing.

Blaser reports a great deal of research which supports the idea that many of the “modern plagues” (asthma, food and other allergies, obesity, GERD, early-onset diabetes, certain breast-cancers, autism (?), to name several) are the result at least in part of the overuse of antibiotics, especially in the young, and the consequent wiping out of certain parts of the “normal flora” in the human body, especially the GI-tract.

As a principal example, he examines Helicobacter pylori (often written “H. pylori”, here abbreviated “H-p”), a stomach microbe, which has inhabited the stomachs of mankind since before there was mankind. An inhabitant of the human stomach now almost extinct in the modern world but happily alive and well, along with many other rare-among-moderns microbes in the GI-tracts of AmerIndians living in Venezuelan jungles (p.214-216).

The differences were stark and almost paradoxical. The 157 North Americans had only a few taxa that were unique to them, while the 12 Amerindians had more than a hundred unique species that were not present in most of the U.S. subjects. Plus they had more taxa than the U.S. subjects by far, even though many species were found in low numbers.

H-p, he tells us, is both an enemy and a friend. As an enemy, it promotes ulcers and stomach cancer (usually in people of advanced ages). As a friend, it helps induce a robust immune system in human young.

Among MDs, he has had trouble, discussed below, promoting the idea that H-p is helpful in early life; that its absence in the stomachs of young humans promotes early-onset asthma and other allergies and also promotes GERD—a disease of the esophagus—in older folks who lack H-p.

The lack of H-p in the human stomach is a twentieth century thing. Before the invention of antibiotics, everyone had H-p, inherited in the normal birthing process from their mothers or otherwise acquired at a very young age.

People born by C-section are also likely to lack those elements of their normal flora which should have been acquired during the birthing process from the slide down the birth canal. The lack of microbes is not only due to use of antibiotics; sometimes they never got “in place” in the first place.

Of course, H-p is not the only microbe “inherited” during birth. Many microbes including H-p make up the various human “microbiomes”—the armies of microbes which inhabit the mucosa of human GI-tracts, skin, noses, vaginas; which cover the skin; etc.

Blaser has had trouble promoting his idea among MDs because H-p has been known by MDs, a stubborn lot, as the cause (or one cause) of ulcers and stomach cancer, and doctors have been unwilling to entertain the thought that a microbe which is pathogenic (as cause of ulcers and stomach cancer) could also be valuable (as an early-life stimulus to the immune system).

This particular stubbornness of the MDs reminds me of the vast stubbornness by which the medical profession (and Big Pharma) greeted the idea put forward c.1970 by Kim McCully, MD, that arteriosclerosis might be caused by problems with homocysteine, and vitamins B-6 and B-12 and folic acid rather than by cholesterol in the diet. Whether he was right, or they were, or they both were, or both were wrong, the savage way he was put down professionally when his early papers appeared seems a valuable lesson about the unwillingness of the medical profession to open its collective minds.

My “take-away”, having read 143 of 220 pages, is that it would be a valuable experiment to give to some babies living in allergy and asthma-prone neighborhoods a teaspoon of H-p to drink early in life and thereafter after each time they are given antibiotics so that their GI-tracts would resemble those of our ancestors.

Later in life, if necessary (upon signs of ulcers) they could be given antibiotics specific to H-p to wipe it out. That way they could have the help of H-p (if any) when young and avoid the harms (again, if any should appear) later in life.

The author’s conclusion is largely a call to stop over-use of antibiotics, to ban the use of antibiotics to fatten cattle and chickens, etc., and to reduce the use of birth by Ceasarian section—or use vaginal swabs to transfer mom’s flora to baby’s skin and mouth.

But the last paragraph answers my call:
In 1998 I predicted in the British Medical Journal that we would one day be giving H. pylori, a disappeared organism, back to our children. Since then, the support for this idea has only grown deeper and the list of disappeared organisms longer. But these are early days in the discovery process; most of the workings of the mechanisms are still secret.





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